Gene List -- Pilot Set
| Pilot Set I | Pilot Set II | Pilot Set III |

No. Gene ID Gene Name Oligo Sequence Source * EST ID Stock ID Seq Verification **
1 AB008103 AtERF-1  for ethylene responsive element
TCTTCTTCGTCTTCCGACGAAGATCGTAGCTCTTTCCCGAGTGTTAAGATCGAGACTCCGGAGAGTTTCG
KDRI AV567266 APD01a09 +
2 AB008105 AtERF-3  for ethylene responsive element
CGCATCGTCTTCACGGCGACGGAATCCGCCGTTTCAATTCGATCTTAATTTTCCACCGTTGGATTGTGTT
KDRI AV542347 APD08d08 +
3 AB008107 AtERF-5  for ethylene responsive element
TTCTTAACTTTCCGCTTCTGTCGCCGTTATCTCCTCATCCACCGTTTGGTTATTCCCAGTTGACCGTTGT
ABRC AA713176 244F24T7 +
4 AF003098 AP2 domain containing protein RAP2.5
TTTGCCTCCTCCATCGGAACAGGCCTGAGCTTTTAACGGTGTCGTTTCAATTCGAAGCGCATGCGTTTCT
ABRC AI994192 227N9T7 +
5 AF004213 ethylene-insensitive3-like1 (EIL1)
CAGCATTCGATTACAGAGATGATTGGCAAACCGGAGCAATGGAAGGAATGGGGAAGCAGCAGCAGCAGCA
gDNA (EIL1)      
6 AF004216 ethylene-insensitive3 (EIN3)
TTGTCTCGGCTTGGTGAATCTCTCTGTCATCATCAGCTTTTAGTTACACACCCGACTTGGGGATGAACGA
KDRI AV562743 APD10d03 +
7 AF022368 BIPOSTO (BIP)
TAGACGGGAACTTTGCCGGTGTACCAGTTACTAATCAAGCTTGTAGTGGCGGTGACAGTGGCAATGCTTG
ABRC AW004158  E11H5T7 -
8 AF030132 glutathione peroxidase
CTGCCCCAGTCTACAAGTTTCTGAAATCAAGCAAAGGCGGGCTCTTTGGAGACGGCATTAAGTGGAACTT
KDRI AV544762 APD13c09 +
9 AF042196 auxin response factor 8 (ARF8)
CTACAACGCGGGAGCCCTTTGTTTCCCATTTGAAGTCGTTTCCACTCATCTTTATATGCCATTCGTTCGC
KDRI AV518674 APD19a02 +
10 AF062860 putative transcription factor (MYB4)
AAGTGCAGCTTAGGGATGATAAACGGCATGGAGTGCAGATGCGGAAGAATGAGATGCGATGTAGTCGGAG
gDNA (MYB4) ATTS0380    
11 AF062888 putative transcription factor (MYB52)
TGTCTGTTGGAAACTCTGCCTCTCAGGGTTTATGTTAATTTGTCCGTACCACATGTACTATAAGGTGGAC
KDRI AV567473 APD23b10 +
12 AF062925 transcriptional activator CBF1 homolog (CBF3)
TAACATGGCCGAAGGGATGCTTTTACCGTCGCCGTCGGTTCAATGGAACTATAATTTTGATGTCGAGGGA
gDNA (CBF3)      
13 AF076277 ethylene response factor 1 (ERF1)
GGTTGTTCTCCGGTTGTGGCGTTGAAGAGGAAACACTCGATGAGACGGAGAATGACCAATAAGAAGACGA
gDNA (ERF1)      
14 AF086906 root gravitropism control protein (PIN2)
CTCAGCACTGCGGTTATATTCGGAATGCTGGTTGCTTTGCCTGTAACAGTACTCTACTACGTTCTTTTGG
KDRI AV548293 APD35e11 +
15 AF087015 abnormal floral organs protein (AFO)
TCCTAAAGCACCACCCGTTAACCGCCCTCCAGAGAAAAGACAGAGAGTCCCATCCGCATATAACCGATTC
KDRI AV520658 APD43g12 +
16 AF087818 auxin transport protein (PIN3)
TGCTGCTATAGCCATCGGATTACGTGGTGATTTACTGCGTGTCGCTATAGTTCAGGCCGCATTACCTCAA
ABRC T04468 35D8T7 +
17 AF176001 putative transcription factor (MYB96)
ATGGTTATTTGATGAGCAAAGCCACGAGATGGTTGGTATGGCACTAGCAGGACAAGAAGGGATGTTCTAG
ABRC AI992598 E11A6T7 +
18 AF181966 methylenetetrahydrofolate reductase MTHFR1
AGCTAAGGAGGTTATTCAACCGACGATCGTGGATCCAGCCAGTTTCAAAGTCTGGAAAGACGAAGCGTTT
KDRI AV533221 APZ13f04 +
19 AF181967 methylenetetrahydrofolate reductase MTHFR2
AGAAGCCGACCCTTCCAGAAACTTGCTCGAGGAGGTGAAGAACAGCTACTATTTGGTAAGCTTGGTGGAG
ABRC W43508 G12G10T7 -
20 AF217458 heat shock protein 70 (Hsc70-5)
GGCCAAGATTGAGGCGGCAAACAAAGCTGTTTCTAAGATTGGGGAGCACATGTCTGGTGGTTCTGGTGGA
KDRI AV556863 APZ22g03 -
21 AF217459 heat shock protein 70 (Hsc70-7)
ATCATCCTCAGCCAAAGGTGGAGACAACGGCGGTGATGTGATTGACGCTGACTTCACAGACAGCAATTAA
ABRC T43623 121K20T7 +
22 AF242580 E2F transcription factor-1 E2F1
GAGCCCAACACCAGAAGAATCCACTGCTACGAGATCACCTACAGGTAGCTGAAGTTACCATACCACATTA
gDNA (E2F)      
23 AF308595 putative DNA repair protein and transcription
GAAAGGCTCTAAAGACGCGACGAAGCATGGGATCGATGAGTGCAATGTCCGGTGCAAATGGAAGGGTCTA
gDNA (PTTVRep) AI993350    
24 L05363 polyubiquitin (ubq3)
GCTGGAAAACAGCTTGAGGATGGTCGCACACTTGCAGATTACAACATCCAGAAGGAGTCGACTCTTCACT
KDRI AV520099 APZ24b04 +
25 L08789 negative regulator of the ethylene response
CAAATCAGCGGTTCCTCCGCCCAACCGCTCGGATTTGTAAAATACCCCCGGTCCATTCAAAAGTTGTTAT
KDRI AV530167 APZ26c10 +
26 L13922 ubiquitin activating enzyme E1-related protein
AACGGCTCAGTACTCCCAGATGACCTTATCCATGAGATGTGTCGCTTTGGTGCCTCAGAGATTCATGTGG
ABRC AI992933 111K11T7 +
27 L14845 nuclear-encoded chloroplast stromal
GAGACTCGCGCTTTCGATGTTCCCAAGAAAGGTTGTAGAATCTATGCCTGCGGAGAGCTCCCGTTAGATG
ABRC AI994039 143K7T7 -
28 L29083 (clone At-ASN1) glutamine-dependent asparagine
GGCAAGAACGTGGCATTGACCATACCACCACTTAAGGCAATTGACAACATGCCGATGATGATGGGTCAAG
gDNA (ASN1) BE038940    
29 M55552 transcription factor (AGL4)
CTGGATGCTGTGAGCGATACTTCTTCCCCCAATAAAGATCTTAAGCAAGTACTGGTGGGGTCTTCGTGGT
gDNA (AGL4) BE521078    
30 M55553 transcription factor (AGL5)
ACATCTAGTCGCAAGCTGAGGGGAACCACTAGTGTCATACGAACCTCCAAGAGACGGTTACACAAACGGG
KDRI AV557878 APZ27g11 +
31 U01103 PSI type III chlorophyll a/b-binding protein
ATCACTTGGCTGATCCCGTCAACAACAACGTCTTGACCAGCCTCAAGTTCCACTGAGGTGATCATCATCT
KDRI AV520130 APZ37d04 +
32 U02949 Columbia cytosolic triose phosphate isomerase
GGTTTCTTGGTCGGTGGTGCTTCTCTAAAGCCTGAGTTTATCGACATCATTAAGGCCGCAGAGGTGAACA
KDRI AV544081 APZ63d07 +
33 U09341 clone HAT9 homeobox protein
GGAAGTACGGCCAAAGGAGCTTTCTCTATCTCCTCAAAGCCTCACTTCTTCAACCCTTTTACTAACCCAT
gDNA (HAT9hmbx) BE039372    
34 U11501 Columbia endomembrane-localized small heat
AGGGACACAAGCGTGGCTCTGTCTCCAGCAAGAGTAGACTGGAAAGAAACAGCAGAAGGGCATGAGATAA
ABRC AA597970 248L22T7 +
35 U13949 heat shock protein AtHSP101 (Athsp101)
AAGTCAGATGTGCTGATTCATATTGCTAACGGGCCAAAGAGAAGTGATGCAGCTCAGGCGGTGAAGAAGA
ABRC BE530525 M77N13T7 +
36 U18410 IAA8 (IAA8)
GGTTCTGATTCTATTGGCTTAGCTCCAGGTGCAGTGGAGAAATCGAAGAACAAAGAGCGGGTTTGAAACG
KDRI AV533026 APZL16d11 +
37 U28422 DNA-binding protein CCA1 (CCA1)
GCCTTCCAAGCTCTCTTCTCCAGAGAGGTATTGCCGCAAAGTTTTACATATCGAGAAGAACACAGAGAGG
ABRC AI992931 109K9T7 +
38 U29699 light-dependent NADPH:protochlorophyllide
TTTGAGAATCAGCTGTCTCAAGAAGCTAGCGATGTCGAGAAGGCTCGTAGAGTTTGGGAAGTCAGCGAGA
ABRC T46041 134K24T7 +
39 U43489 xyloglucan endotransglycosylase-related
CTCTGATCTCAAAAGGTTCCCTCGTGGATTCCCTCCAGAATGCAAGAAGTCCAGAGTCTGATGAACACAT
KDRI AV541643 APZL16b11 +
40 U49075 early auxin-induced (IAA19)
ATCGGATGCTACCGGGTTTGGGCTGCAGCCTAGAGGAGTAGACGAGTGATGATGACTTGAACAAGAAGCA
gDNA (IAA19) ATTS4440    
41 U51036 aspartic proteinase
GGCAGCCTAAACACGATCGGGTTGGTGTCGCGTATGGTTTTAGTATGAACAATCTGCGTCTCAAGTGTTG
KDRI AV537387 FB005g03 +
42 U68017 heat shock transcription factor 4 (AtHSF4)
TGGTGAGTGGGTCCCGTATGACGGAAATAAAGAACGTGGACTTTCACGCGCCGTTGTGGAAAAGCAGCAA
ABRC AI993273 190J12T7 -
43 U74669 ras-related small GTPase (AtRAB11c)
AGAGGATGCTCAGAGCTATGCAGAGAAAGAAGGCTTATCTTTCATCGAGACATCGGCTCTCGAGGCATTA
ABRC AI992584 E7H1T7 +
44 U85254 homeodomain protein AHDP
ATCATGCACCGTTCAGAAGATTCGTGCCGCTTTACAATGCGAAAGCTGATCTTGATCAAGACTGGCGCGT
ABRC AI993655 230N6T7 -
45 X03908 gene (LHCP AB 180) for chlorophyll a/b binding protein
GCCGATCCAGTCAACAACAACGCATGGGCCTTCGCAACCAACTTTGTTCCCGGAAAGTGAGCCAAGTTTT
gDNA (LHCPAB) BE038832    
46 X16076 hsp17.6  for 17.6 kDa heat shock protein
GGAAATCAAAGCCAGTATGGAAAATGGTGTGTTGTCGGTTACCGTGCCCAAGGTGCCAGAGAAAAAGCCA
gDNA (heatshck) AI998904    
47 X17293 Arabidopsis HSP17.4 gene for 17.4kDa heat shock protein
AGGAAGTAAAGGCGAGTATGGAGAATGGGGTGTTGTCGGTTACGGTGCCGAAAGTTCAGGAGAGTAAGCC
ABRC AA597555 201G20T7 +
48 X17295 Arabidopsis HSP18.2 gene for 18.2kDa heat shock protein
GCAACAATGGAGAATGGTGTGCTTACGGTTGTGGTTCCGAAAGCGCCTGAGAAGAAGCCTCAAGTCAAGT
ABRC AA395897 303B6T7 +
49 X63443 heat shock protein hsp 17.6 - II
TGAGATCAAGGTTCAGGTCGAGAACGACAATGTGCTTGTGGTGAGTGGAGAGAGGCAGAGAGAGAACAAA
ABRC ATTS4344 ATTS4344 +
50 X63445 nitrilase I
CCGTAAATGAGCACCCGAGGAAATCGGTTACATTCGTGACGAAGGTGGAGAAAGCTGAGGATGACTCAAA
gDNA (ntrlsl) BE523604    
51 X64460 Lhb1B2 gene for photosystem II chlorophyll a/b binding
CCAACTTCGTCCCCGGAAAGTGAGCGGCTGCTTATTATGTGAATGAGAGCAGAGAAAGAGAGTTTGTTTG
gDNA (Lhb1B2) BE039274    
52 X65549 ANT1  for adenylate translocator
GTGCTGGTGTGCTTTCCGGTTACGACAAATTGACTCTGATTGTCTTCGGTAAGAAGTACGGATCAGGAGG
KDRI AV537563 FB011f10 +
53 X66719 EAT1  for ethylene forming enzyme
TCGATCGCATCATTCTATAATCCGGGAAGCGACTCTGTTATTTTTCCGGTGCCGGAGCTGATCGGAAAAG
KDRI AV520506 FB037h02 +
54 X67034 Athb-6
CTCTAATGTCACTGTGGCGGCTCCGGTGACGGTTCCAGGAGGTAATTTCTTCCAGTTTGTGAAAATGGAG
KDRI AV441576 FB054e08 +
55 X74141 RCI1B
AGGGGGGGAGGGTTGTTACGCGATGTTTCTGCCACCAAATCGATCTCAAAATCCCCATAACCTTTGCTCA
KDRI AV561268 FB058a07 +
56 X75162 gene for BBC1 protein.
CAAGTTCAAGGAGACTACTTGCCTATTGTACGTGAGAAGCCTACCATGGAACTCGTCAAGCTGACTTCAG
KDRI AV553216 FB071a04 +
57 X83380 gibberellin 20-oxidase (1425 bp)
TGTTTGCATAGAGCGGTTGTGAATAGAGAGAGCGCGAGAAAATCGATGGCGTTTTTCTTGTGTCCGAAGA
KDRI AV563665 RZ04h09 -
58 X89504 17.6kDa HSP protein
GTTGGAAGTGACTAATCCGAAACTTCCTCCTCCTGAGCCAAGAAACCCAAGGCAAAACAAGGTCCAATTC
gDNA (HSP) AI998408    
59 X98313 peroxidase, prxr1
GAGTTCACTAGGGCAATCCAGATCTTATCCGAGAACAACCCCTTGACTGGCTCTAAGGGTGAGATCAGGA
KDRI AV520522 RZ08f07 -
60 X98314 peroxidase, prxr2
GGAAAGGATTGTTCACGTCGGATCAAGTCTTATTCACGGATCGTCGGTCAAAGCCAACCGTTGACTTATG
KDRI AV538124 RZ110b10 +
61 X98317 peroxidase, prxr5
GAGACCAACCCGCTCACGGGAGACCAAGGGGAGATCAGGAAGGATTGTCGTTATGTGAACTAATATTGAT
KDRI AV520825 RZ119e023 +
62 X98322 peroxidase, prxr10
GTGGCTCGGTATGCTAATAACAACGCCTTCTTCAAGCGTCAGTTCGTTAGAGCAATGGTGAAGATGGGAG
ABRC AI994196 72E4T7 +
63 X98453 peroxidase, ATP N
TCAGATTCTGTTCTCGAGTGACTTAGCCGTGAACACCACAAAGAAACTAGTGGAGGCTTATAGTCGGAGC
ABRC AI994642 183P17T7 +
64 X98775 peroxidase ATP12a, EST clone 96H1T7
CGGACTGGAGTTCTTACGGGTAAGGCCGGGGAGATCCGTAAGACGTGTCGGTCTGCTAATTAAGAGATAT
ABRC AI099825 126F23T7 +
65 X98803 peroxidase ATP14a
CGAGAAAGATGGTGACGGATATAGCCAACGGTAACGATTTCTTGGTTAGGTTTGGTCAGGCTATGGTGAA
ABRC H36849 179O2T7 +
66 X98805 peroxidase ATP19a
AACGCTTCGCCGGAGGATCGGAGCAAGAGTTCTTTGCTGAGTTCTCCAACTCCATGGAGAAAATGGGAAG
KDRI AV541742 RZ130a04 -
67 X98806 peroxidase ATP20a
AATCTTGGCCGCGTTGGGGTTAAGGTTGGGAATCAAGGCGAGATTCGAAGGGACTGCTCTGCTTTTAACT
ABRC AI993026 111D16T7 -
68 X98807 peroxidase ATP21a
CCTCAAACTCTACGGCCTTTAACCGCGCTTTTGTGATAGCCATGACCAAACTTGGCCGTGTTGGAGTTAA
ABRC R29841 161P11T7 +
69 X98808 peroxidase ATP3a
CATCCTTGAGGTTCGGAACCGAGTTCGGGAAGTCGATGGTCAAAATGAGTCTCATAGAAGTTAAGACTGG
KDRI AV544838 RZ139b10 -
70 X98855 peroxidase ATP8a
GTGGATACGTGGTTCAGCTTAAGCAAATGTGCCCGATCGGTGTCGACGTAAGAATCGCAATCAACATGGA
KDRI AV541045 RZ159c05 +
71 X98925 stromal ascorbate peroxidase
ATGCGAAACTCAGCAATCTTGGCGCAGAATTTAACCCTCCGGAGGGTATCATTATCTAATGGGGCACCTA
KDRI AV539751 RZ159d09 +
72 X98926 thylakoid-bound ascorbate peroxidase
GACTACGCTGAAGCCCATGCCAAGCTTAGCAATCTCGGTGCAAAATTTGATCCTCCCGAGGGCATAGTCA
KDRI AV518387 RZ169f03 +
73 Y08061 endomembrane-associated protein
GAACCGGAGACAACGACGACAGCGCCAGTGGCTGAACCACCAAAGCCTTGATTTGTTTTCAAGATGGTAT
KDRI AV559500 RZ170e07 +
74 Y08781 peroxidase ATP22a
GGAGGAGAGACGGCAGACTATCGACAGTGGCTAGCGTTCAACACAGTCTACCCCAGCCTAGTTTCAAATT
ABRC H76426 194G3T7 +
75 Y11788 peroxidase ATP24a
CAGCCGTAACAGAGGAATTCTTCAATCCGATCACGTTCTTTGGACTAGTCCGGCCACAAGATCCATAGTG
KDRI AV544290 RZ32f04 +
76 Y11789 peroxidase ATP23b
AGGAGAAGGGTTACTGAATTCGGACCAGGAGATGTACACGAGCTTGTTCGGGATACAAACGCGGCGAATC
ABRC T41878 109F3T7 +
77 Z14991 UBC10  for ubiquitin conjugating enzyme homolog
AAGTACGAGTCCACTGCACGAAGCTGGACTCAGAAGTATGCCATGGGCTAAATGGAAAATCCCACCTACT
gDNA (UBC10) BE037619    
78 AF047976 putative ethylene receptor (ERS2)
GATGTCGAGAGGCGGTGGATATTCTGGAGAAACGTTTAGAACCTCAACTCCTCCGTCTACTAGCCACTGA
ABRC BE527688 M69A08STM -
79 AF115800 cultivar Bu-0 floral homeotic protein AP3
TTCCACCAGAACCATCACCACTATTACCCCAACCATGGCCTTCATGCACCCTCTGCCTCTGACATCATTA
KDRI AV533954 APZ07a07 +
80 AF115830 cultivar Bretagny floral homeotic protein PI
CGCCATTGAACATGGCCTCGACAAAGTCCGAGACCACCAGATGGAGATCCTTATATCAAAGAGGAGAAAT
KDRI AV530577 APZ07h01 +
81 D83511 DNA for ATMYC1
CGGGGCTGCAGTTGCGTCCGTAGGAATGATTAAGCGAGAGCTGAGAAGAGTCATTGGTGATTTGTTTTAA
KDRI AV521644 APZ23c06 +
82 L24119 ETR1
ATCACTAGACAACATAAGAGATGTTCTGTCTGATCTTCTCGAGCCCCGGGTACTGTACGAGGGCATGTAA
gDNA (ERT1) AW004547    
83 M83534 isocitrate lyase gene
TCAAGCGCATGAACCTCAACGAGAACGAGAAGAATCAGAGACTGAGCGAGTGGTTAACCCATGCAAGATT
gDNA (isolyase) BE524514    
84 M84701 bete-3 tubulin (TUB3)
TACCAGCAATACCAAGATGCAACGGCTGATGAAGAAGGTGACTACGAGGATGAGGAAGAAGGTGAATACC
KDRI AV552762 APZ34a06 +
85 U19382 putative chlorophyll synthetase (G4)
GTACCAGGCAAGCGCGCAGCCATTCTTGGTGCTCGGAATATTTGTAACGGCATTAGCATCGCAACACTGA
KDRI AV520285 APZL32a02 -
86 U21952 ethylene response sensor (ERS)
AAGCAGTAGCAGTGGTTCAATGGCGCTACATCTTGCAGCTAAATCACAAACCAGACCGTGGAACTGGTGA
ABRC AI994410 144E10T7 +
87 U43147 catalase 3 (CAT3)
GGCTGGAGACAGGTACAGATCATGGGCACCAGACAGGCAAGACAGGTTTGTTAAGAGATGGGTGGAGATT
KDRI AV565434 APZL57h03 -
88 U66916 12S cruciferin seed storage protein (ATCRU3)
CGGGTAGAACCTCGCTCTTGAGGGCATTGCCATTGGAGGTCATATCAAATGGTTTCCAGATCTCTCCCGA
gDNA (ATCRU3) BE523614    
89 X13611 ats1A gene for ribulose 1.5-biphoshate
ATTCGACAACACCCGTCAAGTCCAGTGCATCAGTTTCGTTGCCTACAAGCCACCAAGCTTCACCGGTTAA
gDNA (ats1A) BE039268    
90 X14312 Arabidopsis CRA1 gene for 12S seed storage protein
GTTGAGTTCAAAACAAACGCTAACGCGCAAATCAACACTCTGGCGGGACGAACCTCAGTCTTGAGAGGTT
gDNA (CRA1) BE523607    
91 X53435 auxin-inducible gene Aux2-11
GTTTTACCTGAAGCTACTGAGAAAGAGATTGAATCCACTGGAAAAACTGAAACCGCTTCTCCTCCAAAGG
KDRI AV553750 FB010e02 +
92 X71878 Lhcb4
CAACAATTGGGCTACTCACCTCAGTGATCCACTCCACACCACCATCATCGATACCTTCTCCTCATCTTAA
gDNA (Lhcb4) BE039282    
93 X95295 gst6
TAGCGAGTGGATTAAGAAGATCTCTGCCAGGCCTGCTTGGGCTAAGGTTATTGACCTCCAGAAGCAGTAG
KDRI AV544289 RZ06c11 +
94 Y11122 ATHB-14
GGAAACGACTCTTGTAGCCCTTCAAGACATAATGCTAGACAAGACCCTTGACGAACCTGGTCGTAAAGCT
KDRI AV523113 RZ182f08 +
95 U39449 actin (ACT1)
GCAGATGTGGATCGCAAAGGCAGAGTATGACGAGTCAGGTCCATCGATTGTTCACAGGAAGTGCTTCTGA
KDRI AV564325 APZL44c05 +
96 U39480 actin (ACT3)
GCAGATGTGGATCGCAAAGGCAGAATATGATGAGTCAGGCCCGTCGATTGTTCACCGGAAATGCTTTTGA
ABRC AI995092 187A14T7 +

*  KDRI: Kazusa DNA Research Institute; ABRC: Arabidopsis Biological Resource Center; gDNA: genomic DNA amplified with indicated primer in parenthesis
** + : sequence verified;?- : ambiguous sequence or more than one insert; blank: genomic fragments were not sequenced