• The Arabidopsis Information Resource (TAIR) (A database of genetic and molecular molecular biology data for the model higher plant Arabidopsis thaliana)
  • 1001 Genomes (A Catalog of Arabidopsis thaliana Genetic Variation)
  • DOE Joint Genome Institute (JGI) (Arabidopsis lyrata genome sequence assembly)
  • Salk genomic expression database (Arabidopsis Transcriptome Genomic Express Database)


  • RepBase (Repbase Update (RU) is a database of prototypic sequences representing repetitive DNA from different eukaryotic species)
  • Plant Genome Database
  • Munich Information Center for Protein Sequences (MIPS) (MIPS supports and maintains a set of generic databases as well as the systematic comparative analysis of microbial, fungal, and plant genomes)
  • MazeGDB (Maize Genetics and Genomics Database)
  • Maize Genome Browser
  • Gramene (Gramene is a curated, open-source, data resource for comparative genome analysis in the grasses)
  • miRBase  (microRNA database)
  • ASRP (Arabidopsis thaliana Small RNA Project)
  • PubMed
  • SRA (Short Read Archives)


  • ATTED-II (Co-regulated gene relationship analysis for gene function estimation)
  • VirtualPlant 1.0 (VirtualPlant integrates genomic data and provides visualization and analysis tools for rapid and efficient exploration of genomic data)
  • The Bio-Array Resource for Plant Biology (Web-based tools for working with functional genomics and other data)
  • DIURNAL (DIURNAL is a web tool that allows you to search and visualize diurnal and circadian gene expression profiles for your favorite Arabidopsis genes)
  • zPicture (Alignment and visualization tool)

Microarray Links